Monday, February 23, 2009

Ultra Model Topless Set

new blog: Labtutorials in Biology

Just a quick note on an interesting new blog by Bálint L. Bálint , Labtutorials in Biology. In it, he would like to introduce basic materials, tools and methods from molecular biology, so that students learn such as their use.
is exciting example of the Post " Liquid handling with pipettes " in which he explains with many people (including your own) pictures and videos, the operating principle of pipettes, the great variety of different types of pipettes - from the disposable pipette plastic to pipetting - shows and their use in the laboratory is received.

the post should probably do that many times the crime lab technicians from television thorough that I no longer have these chronic wounds on the forearm [1].


[via science roll ]

[1] From the constant biting, so as not to cry out loud having to face the regular scrap of expensive pipettes.

Saturday, February 21, 2009

Port Royale Multiplayer Vista

Diamonds in the Sky

not we stay in after my last post astronomical a bit the stars. But this time the literary art of Mike Brotherton has compiled an anthology that is worthy of more attention.

Very often, the crowd is real "science" in science fiction rather low. Because of the speed of light is traveling if its needs in the future or past. Great space battles with explosions and screams . The science is in favor of the story on the track. And while some people feel even good science fiction does bad Science has, Mike Brotherton for his anthology "Diamonds in the Sky" is trying to do the opposite: to compile SF short stories that reflect the most accurate astronomical contexts. So much so correctly, that his project funded by the National Science Foundation, was and will serve the short stories for students as a study aid!

I really like that in the anthology both sides to come word - excellent science fiction authors such as Jeffrey Carver, David Levine and Mary Robinette Kowal, but also scientists such as Kevin R. Grazier (involved in the Cassini / Huygens mission), or Valentin Ivanov (ESO staff).
Alle Kurzgeschichten sind übrigens frei zugänglich über die Read-Links unten. Viel Spaß beim Lesen!

Contents

In the Autumn of Empire (Jerry Oltion)

A cautionary tale about why scientific misconceptions can be important. This story will also be appearing in Analog soon. Keywords: The seasons. Misconceptions.
Read

End of the World (Alma Alexander)

Nothing is forever, not even the earth and sky. Keywords: Evolution of the sun.
Read

The Freshmen Hookup (Wil McCarthy)

An exploration of how the elements are built in stars using the antics of college freshmen as a metaphor. Keywords: Stellar nucleosynthesis.
Read

Galactic Stress (David Levine)

You think your life is stressful? How about having to deal with the entire universe? Keywords: Scales of the Universe.
Read

The Moon is a Harsh Pig (Jerry Weinberg)

Robert Heinlein’s novel The Moon is a Harsh Mistress about a revolt on the Moon was a landmark novel of the 1960s. Jerry’s story is also educational. Keywords: Phases of the Moon, Misconceptions.
Read

The Point (Mike Brotherton)

What is the meaning of life in an expanding universe? This story previously appeared at www.mikebrotherton.com . Keywords: Cosmology
Read

Squish (Dan Hoyt)

How would you like a whirlwind tour of the planets? Keywords: The Solar System.
Read

Jaiden’s Weaver (Mary Robinette Kowal)

So many things about life on Earth depend on the cycles of the sky, from the moon and tides to seasons and more. Well, what if the sky were different? How would humans adapt to life on a world with rings? Keywords: Planetary rings
Read

How I Saved the World (Valentin Ivanov)

The movies Armageddon and Deep Impact featured nuclear bombs to divert asteroids headed for Earth, but this is really not the best way to deal with this threat. This story was originally published in Bulgaria, in the annual almanac “Fantastika”, the 2007 issue. Publisher: “Human Library Foundation”, Sofia. ISSN 1313-3632. Editors: Atanas P. Slavov and Kalin Nenov. Keywords: Killer asteroids
Read

Dog Star (Jeffrey A. Carver)

It permeates space and has a subtle but important effect on our existence. What if the effect were not so subtle? Keywords: Dark Energy
Read

The Touch (G. David Nordley)

Life in the Milky Way can be harsh depending the neighborhood you live in. You should hope you have helpful neighbors when the times are harsh. This story originally appeared in The Age of Reason , edited by Kurt Roth, at SFF.net in 1999. Keywords: Supernova (type 1a)
Read

Planet Killer (Kevin Grazier and Ges Seger)

And sometimes the times are harsh but you have to depend on yourselves. It helps if you have a little unlikely but useful faster-than-light starships as in Star Trek . Keywords: That would be telling!
Read

The Listening-Glass (Alexis Glynn Latner)

What’s the future hold for astronomy and astronomers? What would it be like to work on the moon? An earlier version of the story was first published in the February, 1991 issue of Analog Science Fiction/Science Fact. Keywords: Radio astronomy, the Moon
Read

Approaching Perimelasma (Geoffrey A. Landis)

A sophisticated tale about the ultimate journey. Previously published in Asimov's Science Fiction, Jan. 1998th Keywords: Black holes
Read

Friday, February 20, 2009

Stopping Chicken Pox Itching 3 Yr Old

epigenetics ≠ Lamarckism

An article at Heise online by challenging the titles " rodents inheritance of acquired skills is on had lately in the media so popular" Lamarck was right! "train jumped.

It's in the article on current research in the neurobiology of mice. Briefly was a mouse line that due to a mutation has difficulty with memory, tested for memory performance. The researchers found that young mice of this line when they were brought up in an environment that calls for the brain - Toys, social interactions, movement - performed better in memory tests. So far, so well known. Surprisingly, it was now for the researchers found that the offspring had better memories of this special sponsored mice, even though they grew up not even in a stimulating environment.


The author of the Heise article sees the belated revenge by Lamarck to Darwin. Why this is false, and how the results should be interpreted more?

Jean-Baptiste de Lamarck (1744 - 1829) was a French scientist with a very interesting life. Without a college degree, he wrote the then-standard work on the flora of France, Flore Francoise , and was then a member of the Paris Academy of Sciences and employees of the Paris Botanical Garden. The site at the botanical garden was very poorly paid (depending on the source, even not at all), he had to otherwise provide an income: the publishing of other botanical books. This took place during the French Revolution, and while elsewhere were cut off heads in the city, received Lamarck a job and professor at the newly founded natural history museum - now responsible for insects and worms, but before you at this time to defend such a direction from above, a botanist would rather learn something new about animals.
Lamarck is known, however, until today for his theory of evolution developed in 1800. For while the idea of evolution, ie the formation of new species from older, for some time in early science haunted [1], still lacked a workable mechanism that would do this. Lamarck's view this was an inherent urge all organisms to evolve from a simple prototype to a better, more complex form out.
The most famous image, which describes the Lamarckian evolution takes, the giraffe, for example. Why do giraffes have such long necks? Because giraffes have their first or short necks elongated their lives over to the succulent leaves at the top to reach the trees, and inherited this so extended necks to their offspring. After several generations had then giraffes with long necks. The problem was to Lamarckism, 50 years later that Darwin had an idea for an evolutionary mechanism, and through natural selection could be not only loads data from fossils and extant species explain, but the long necks The giraffe: it had to do with the succulent leaves at the top in the trees, as Lamarck was still correct. In the population of giraffes, there were different neck lengths (variation), and if only the giraffes reached with the longest necks of the succulent leaves, then they also had more offspring inherited the long necks.


If in the media in recent months is about epigenetics, it is often evoked the Lamarckism. What is epigenetics?

A precise definition of epigenetics is still, in general, one understands but heritable characteristics that are not encoded in the sequence of DNA (which would have to genetics). A epigenetic inheritance, it would, for example, if the level of expression of a gene is inherited (in the extremes, therefore, whether a gene is turned on or off). How could a piece of information to be passed if it is not inherited in the form of a DNA sequence? Of the various options shown so far I will briefly describe two here: a gene is not only the sequence that is later translated into a protein. Before this area is a section of DNA, which sets as a kind of (dimming) switch, the amount of protein produced by regulatory proteins bind to it - the promoter. By attaching methyl groups to cytosines (one of the four bases of DNA), promoters set aside be. This is not a change in DNA sequence, the cytosines are still sitting in place in the promoter. The methyl group is covalently bonded to the cytosine, ie is inherited in the usual way with the cytosine on to offspring. In the progeny of this gene will be shut down so well.
is the second epigenetic mechanism no change of bases necessary. In the nucleus, the DNA floating around not naked, but there are a number of structural proteins bound to them. Very important here are the histones, which are small spherical complexes (called nucleosomes) wrapped with DNA [2]. The winding of DNA is needed to several meters away irrepressible in a cell nucleus a few micrometres in diameter. There are various condensation stages, the strongest of which the known metaphase chromosomes. The expression of genes in such a condensed state, but no longer possible.

The regulation of these condensation via modification of histones, attaching methyl groups, for example, increasing the degree of condensation, while an attached acetyl group decreases it [3]. It is therefore possible for the cell to regulate the expression of genes in a relatively small region of a chromosome.

In recent years, is now much evidence for an epigenetic inheritance Properties found which an organism acquires during its life. The memory performance of mice in the above linked Heise article is an example, but also increased recombination in Arabidopsis plants after UV-irradiation of their parents covered. Superficially one can understand why some people think of the inheritance of the acquired characteristics of Lamarck, or why the discussion of epigenetics in the media often Lamarckism is thrown. But there are several reasons why you can not equate those two concepts!

  • While all current research described an external influence produced the inherited characteristics in organisms, Lamarck himself vehemently protested against such environmental influences on inheritance. In his view, finally lived each organism occupies a driving force that compelled him to evolve more complex. According to Lamarck
  • such acquired characteristics accumulate in a population, because they can not be lost. Epigenetics is a very dynamic and unstable process effects such as the Heise article is lost after several generations.
  • epigenetics still rests on a genetic basis. The epigenetic modifications are generated by proteins that are encoded in the genome very conventionally. Epigenetically inherited characteristics are also subject to evolutionary forces such as selection and genetic Drift. So WIN Darwin, Lamarck FAIL.
What I now do not quite understand: Why is Author Ben Swan's article so that the impression of the inexperienced reader, current research shows the problems with Darwin's evolution theory, which could be explained by the repressed idea of the underdog Lamarck? And why is the entire article, the term epigenetics not once, despite being in a article of Technology Review sister product (of which the Heise article was written off) was discussed in detail? Since the text has come for Heise online relationships are relatively long, certainly not for lack of space.

Funnily point the way: In Technology Review also reported on a second, similar study in mice, in which poor mothers had offspring that were also bad parents. This remains the Heise article only option, "for example, that the impact of early child abuse can skip generations [...]."

Oh, and both thumbs up for the many commentators on the article, criticizing not only the quality of the article, but also the inevitable creationists in their barriers have .


[1] For example, Darwin's grandfather Erasmus Darwin about a beautiful poem written .
[2] Histone proteins are positively charged, DNA negative.
[3] quite so simple is not. The effect is affected by changes in the histone, the amino acid changes, and even the type of attached group. Based on the genetic code, this regulation as histone code was called.

Thursday, February 19, 2009

Polaroid Ee66 Bedienungsanleitung

New toys: Starmap

such a beautiful night sky like last night I have not seen for a long time. Not a cloud in the sky, and even on the road with lights around me were very many stars visible.
I then got my most expensive program to buy iPod touch: Starmap . The 10 € but were well spent, Starmap is it worth every penny (and more)! I will not list all the functions to which I have previously used the program enough to know them all. Therefore, a more subjective idea of what I liked to use.

Starmap needs its own position in order to present an accurate picture of the night sky at the current location can. With an iPhone would not be a problem that has finally GPS. I had to look out but not fast the longitude and latitude of my site, because the iPod touch can sometimes find its location - Wi-Fi hotspots. And as my own wireless router is stored in any database (really know someone how hotspots are in there, and who is running the database?), Starmap was alone, the current position. The current time Starmap knew then, what objects in the sky had to be [1].
What do I do now if I want to find, for example, the constellation Orion [2]? A brings pressure on "constellations" in the menu bar me in a list that I can switch between all and the currently visible constellations. If I hit "Orion" button appears on the sky map, an arrow, which steers me in the direction of Orion, based on a view towards the north.
The movement then registered the iPod way. With the built-in accelerometer can I use the iPod horizontal and vertical motion, and the sky map will scroll in that direction! Zoom in and out goes the way and as for the iPod touch / iPhone usual.
Other nice ideas that are very clever solution: you can continuously both the brightness of the sky, and the set of stars to display on screen the actual visibility adapt. To give yourself not to look with a bright screen to pollute , there is also a red light mode. For additional information, many objects are stored, for the planet also pictures. Oh, and Pluto is at least in Starmap still a planet . ;-)


[1] also such data as up and set times are available offline, Starmap requires no Internet connection. can
[2] According to proceed even with planets, stars and galaxies.

Monday, February 16, 2009

Family Guy Online Ipod Touch

Fringe locks the scientists away

What's new at our like anti-science television series from JJ Abrams, Fringe?

In Episode 14 of the current one appears at the beginning of the question to pursue, is where to lock away the many criminal scientists. Sure, we do best on a prison into which thousands of Bond villains are delivered. Only where it indicates is a prison? This is really no serious question to Germany of course! And the name of "science Prison" is the American public class in itself - that sounds so eerily beautiful to Karloff, or equal to Mengele.

Sunday, February 15, 2009

Breastfeeding Mom Old Man

Happy later, Charles!

Unfortunately, last week was so much other stuff that I do not have time for a post on Charles Darwin's birthday. Instead now belatedly to write about a man who over the past weeks already written so incredibly much, was that it was the most probably to his neck out is [1], I will briefly report on an event last Thursday was held in time for Darwin Day .

The Max-Planck-Institut for Evolutionary Anthropology in Leipzig announced in a press release ( streaming video ) the draft sequence of the Neanderthal genome. The first is a bit questionable, since the announcement of results in the press before a full-fledged publication in a peer review journal is not a model act for a scientist. Here you can squeeze at least one eye, I think - the appointment of Darwin's birthday was just too tempting, also carried the press conference also simultaneously at the annual meeting of the American Association for the Advancement of Science (AAAS), which publishes, among other things, the Science Magazine . Still, a funny feeling remains in the stomach.
Apart from that the whole thing is of course very exciting. Just three years Svante Pääbo announced by the Department of Evolutionary Genetics to the MPI, it will sequence the Neanderthal genome. This is only possible in such a short time (remember the work of the Human Genome Project in the 90's lasted about 10 years), because now new, faster sequencing methods are available. These so-called second-generation sequencing technologies, but all suffer from the problem that they produce very short sequence pieces (20-50 base pairs). And here it helps the hard preparatory work of the Human Genome Project, as can be with the human reference genome be composed of the Neanderthal genome with very short sequences. One expects very few differences between the two genome sequences, the genomes of humans and chimpanzees are, after all very similar.
To get Neanderthal sequences, but they must first several problems can be avoided. Contamination by human DNA of the researchers involved would be fatal, so had the Neanderthal samples are processed in clean room conditions. Nevertheless, the bones were very, very long in the soil around, the samples contain about a lot mikrobiolle DNA. The course was mitsequenziert first, but could be removed through bioinformatic methods again: Bacterial genomes are compared with the human very small, and there have already been sequenced many. By the Leipzig researchers compared their sequences with bacterial genome sequences, they could detect impurities in their data and then discard. These impurities make up about 90% of the sequenced material! If one also considers that the group led by Svante Pääbo of DNA isolation protocols for incorrect about 99% loss was , it's amazing how far they have come in the short term.

It must, however, expressly stated that it is best, is a first draft sequence. About 60% of the genome sequenced, but this only once. In order to methodological errors to protect the sequencing technologies, should each nucleotide in a genome sequence can be sequenced, but several times (the human reference sequence, incidentally 12x coverage). Another problem is to estimate sequence differences between individuals of a species the variability of the genome sequence of a species to as many individual sequences should be present. This is currently in progress in the human genome, such as the Human Genome Project or the 1000 Genomes Project . Even the first human genome reference is in fact a mixture of the sequences of twelve anonymous individuals dar. soon but is also the sequencing of other Neanderthal samples Begin so that this problem should be well resolved at some point.
A big problem is not to remain anonymous also: Due to the great age of the samples, the DNA is fragmented and it is therefore very likely that we never had the complete genome sequence of the Neanderthal are obtained.

Nevertheless it is possible already to this first data to follow up interesting questions about the relationship between Homo sapiens and Homo neanderthalensis . In much of Europe, both human species lived side by side for several thousand years. It came to a hybridization, that is common to progeny of both species? If the modern man, perhaps even Neanderthals as ancestors? The recent sequence data (based on mitochondrial sequences and the Y chromosome) indicate more towards no.
The expression of the gene MC1R (melanocortin 1 ) that affects the degree of skin pigmentation, showed that there were possibly light-skinned and red-haired Neanderthals (Lalueza-Fox C et al (2007), Science 318:1453-5).

Finally, I would (yes you guessed it,) with this post - a podcast! About two years ago, is still relatively early in the Neanderthal genome project, Svante Pääbo, together with Thomas Jarvie (from 454 Life Sciences, which represent the sequencing available) in the always good Futures interviewed in Biotech podcast [MP3 link ]. I have not heard since the interview will, but maybe listen again. Let's see how Pääbos could keep up plans two years ago with the actual development.

[1] The public attention that Darwin and evolution is certainly true and just enjoy good, but I'm looking forward to the next, quieter weeks. Until it in late then with the 150th anniversary of Origin release goes around again.

Friday, February 6, 2009

Settings To Bake Cake In Kenstar Oven

coffee creates cancer? The bubble burst

ResearchBlogging.org The scientific blog world is in Riot : The rag The richly illustrated English "newspaper" Daily Mail reported on possible genotoxic hazards of caffeine for pregnant children. And quotes like the scientist Marcus Cooke of the University of Leicester, who has just announced plans to investigate. The trouble has, here, on the one hand wants to persuade a newspaper, even on the basis of the announcement of a research project, pregnant women feel guilty, and also generously distributed recommendations on how to live in the future. On the other hand, however, the scientists interviewed is not innocent:
'Although there's no evidence at all of a link between caffeine and cancer, we're putting two and two together and saying: caffeine can induce these changes and it has been shown that these changes are elevated in leukemia patients, "added Dr Cooke.
It is derived from the words absence of evidence the basis of his research and also equal to the matching result from? I cry because time equal to the Nobel Prize committee ...

What the blogging colleagues (with the exception of Neuroskeptic ), in their excitement, but not received, and "overlooked" Mr Cooke was well: the caffeine content, and genome stability is already understood quite well! Sorry, but not the way it is presented in the article. But first things first.


signaling of DNA damage

I have mentioned a few posts already on the repair of DNA damage, but an important part of it I have been embezzled. For before the cell actually repairs the damage, it must still decide whether the repair worthwhile. For with numerous damages there's always the risk that creep mutations. And then before cancer develops, the organism sacrifices rather have a cell. This programmed cell death follows a strict genetic program and is known as apoptosis. the cell has decided to repair the damage they do, first of all the numerous repair proteins be activated. Moreover, during the repair of the cell cycle should be stopped. It would be very bad if the cell is located in the repair process begins to replicate their DNA, or to divide.


ATM and ATR

play a central role in all these signals, two related proteins, called the human ATM and ATR. Both are kinases, ie enzymes that regulate the activity of other proteins by transferring phosphate groups to certain amino acids. In the case of ATM and ATR kinase activity that is now dependent on damage to DNA: Because they are activated, and transfer phosphates to proteins, the above-mentioned processes such as apoptosis, cell cycle, regulate or repair. Fallen ATM and ATR, this results in humans with inherited diseases such as Ataxia-telangiectasia (ATM, trying times to say it several times) or Seckel syndrome (ATR). Actually it should not surprise that people who suffer from Ataxia-telangiectasia, are very sensitive to radiation. Ionizing radiation produces DNA damage, finally, and by the loss of ATM function then the regulation of repair is not everything, etc.. This point is important for another reason, as we shall see.


image of ATM signaling pathway in the cell from the gene assist TM Pathway Atlas of Ambion / Applied Biosystems. Shown are the most important processes that are regulated by ATM. Target protein can be activated by ATM by attaching phosphate groups represented by the circles with "P" on the proteins.


caffeine inhibits ATM and ATR



A few years ago then took a few research groups, an interesting discovery: The activity of ATM (and ATR) can be inhibited by administration of caffeine. The group of Zhou et al. With luck, her in the Journal of Biological Chemistry published articles may also be used online free for educational purposes. Working through with cell cultures, they showed that the addition of caffeine activated more of ATM signaling pathways were suppressed, such as a stop signal in the cell cycle, which is to prevent the initiation of cell division when DNA damage (the G2/M-Checkpoint). This effect mimics the behavior of AT cells (cells of patients suffering from Ataxia-telangiectasia and in which ATM is inactive) to see how nice to see in Figure 5 of the article.


Figure 5 in Zhou et al. (2000)

Chk2 is also a kinase that is regulated but the main repair pathway and are activated by ATM needs. Without big now, the principle behind electrophoretic methods to explain do you see after irradiation the cells, the activation of Chk2 by ATM in the higher band at 2 (compare with 1) because the Chk2 molecule is by attaching a Phosphatgrupppe grown. This activation occurs after treatment with caffeine no longer take place (the band is at 4 on the same level as the inactive control at 1, so we were a phosphate group turn hanged). This result is comparable with the behavior of AT cells without caffeine treatment (numbers 5 / 6).



Figure 7 from Zhou et al. (2000)

In Figure 7, Zhou and colleagues have another ATM-regulated way regarded apoptosis. Very important for initiating apoptosis (programmed cell death) is the protein p53, which can also be activated by attaching a phosphate group from ATM. As you can see very beautiful, p53 is activated with increasing caffeine concentration less and less, and even without irradiation (ausgeüllte circles: + irradiation, open squares: irradiation)! This means that in a few cells whose DNA was not severely damaged by irradiation, occurring spontaneous damage resulting in activation of p53 (and perhaps the triggering of apoptosis). And caffeine can be suppressed by inhibition of ATM.


The medical application

Earlier I said in the description of the disease ataxia-telangiectasia that patients are very sensitive to radiation, and the data have also shown why: ATM as a central regulator of many cellular processes after DNA damage can these processes not activate, the damage is not repaired and the cells cheerfully try to divide anyway. Since caffeine can mimic this appearance of AT cells, it has been used for several years in cancer medicine: Tumor cells are more sensitive to radiation therapy when administered to the patient receives additional caffeine. And this beneficial effect was also for several chemotherapeutics be shown (such as cisplatin ).


not forget: the concentration!

What in the Daily Mirror article is unfortunately omitted: To achieve these effects of caffeine in humans, concentrations of about 10 mM are necessary. After drinking a cup of strong coffee, the concentration in the blood but at about 50 microns [1], so it is about 200 times lower. In other words, caffeine is after more than five hours in blood taken down, we would have to at least 200 cups of strong coffee in less than five hours drinking in order to achieve an effect of caffeine on ATM!

The conclusion of the story: The Daily Mirror should be ashamed, pregnant women scare, and Mr. Cooke should research before his next project, at least five minutes brauchts namely, not more. And the literature is shown at least partially accessible.



[1] Calculated from a caffeine plasma concentration of 10 mg / l and the assumption of 8 mg / kg caffeine after drinking a cup of coffee.
[2] Sorry for the title, but I could not help me ;-)


Zhou, BB, Chaturvedi, P., Spring, K., Scott SP, Johanson RA, Mishra, R. Mattern, MR, Winkler JD, Khanna, KK (2000). Caffeine abolishes the mammalian G (2) / M DNA damage checkpoint by inhibiting ataxia-telangiectasia-mutated kinase activity J Biol Chem, 275 (14), 10342-10348 my

Wednesday, February 4, 2009

Bollywood Masala Aishwarya



not I the current financial crisis, but the boom and subsequent crash of the biotech industry at the end of the 90s. Keith Robinson has witnessed first hand at one of the former biotech company Millennium Pharmaceuticals , and has a few days ago on Omics! Omics! indulged in a little memories.
Of course, if you have a mountain of loot you probably want to protect it. Enter the lawyers. Millennium had always filed on their discoveries; protect now they had lots of discoveries to. But protect from what? Well, the paranoia was a loss of "Freedom to Operate", usually known as FTO. Nobody knew what would stand up as a patent -- but there were instructive examples from the early biotech era of business plans sunk by a loss of FTO -- and expensive lawsuits that clearly marked that loss. So the patenting engine took off -- an expensive insurance policy against an unpredictable future.
[...]
This was the late 90's and the hype was getting thick -- we were guilty but so were others. Millennium wasn't a big pusher of high gene counts -- at least in the terms of the day (but that's another whole story), but certainly we started selling all those genes we had & the ones we extrapolated were still out there. A key part of the business model was to sell the genes many times - if we could sell the same gene to Lilly for cardiovascular and metabolic for Roche and AstraZeneca for inflammation, all the better. Not that anything underhanded went on, we'd present the case to each company and most of the deals had exclusivity only within a therapeutic area.

to the point with the numbers of genes is he eingeganen detail in another post . Whence came the incredibly large numbers in the estimates of how many genes in the human genome are associated with, at one time was before the human genome sequence published? 50 000 100 000, or maybe even 200 000? Probably mainly competition. If the biotech companies A and B want to compile with both bioinformatics and hard work to the sequencers databases with human genes and sell them, to pharmaceutical companies about which database is then bought more? As long as you can only rely on rough estimates precaution that twice as many genes. So that has rocked slowly then up to a very lofty heights. Own fault if everybody cooperates. Was more sobering for the customer then the result of the Human Genome Project: about 25000-30000 genes in recent years, rather then shrunk to 22000-23000.
This is not to say that not a few people had already thought about this in the nineties:
So my colleague tried a new approach, which I think was to say: we have a few percent of the human genome sequences (albeit mostly around genes of interest and not randomly sampled). How many genes have been found? And what would that extrapolate out to for the whole genome.

His conclusion was so shocking I admit I refused to believe it at first, and never quite bought into it. I think it was about 25-30K. How could the textbooks be off by 2X-3X? I could believe the other genomics companies might be optimistic in interpreting their data, but could they really be deluding themselves that much??

But, the logic was hard to assault. In order for his estimate to be low by a lot, you would have to posit that the genomic regions sequenced to date were generated unusually poor - and that the rest of the genome was packed.

Both articles are worth reading, and hence quite interesting because you hear about the young age of genomics usually only from the side of academic research.

Tuesday, February 3, 2009

Milena Nadine Nursing Bras

(can not) JoVE videos

had since the last time I presented a video of the Journal of Visualized Experiments (JoVE) is already gone a little time. I of course every now and then literally threw an eye, but the way the set video has unfortunately changed. While there were short videos of experiments, first, the groups turned their findings are now mainly in the videos the methods of the working groups presented.
These videos are interesting but unfortunately most for people who work on a similar area.
Thus have I as often as you do antibody staining of chicken embryos with which experimental setup can be studied the role of olfactory signals on the flight of fruit flies , or how to methylated DNA is .

all sounds very exciting, but then after the brief introduction, rather boring quickly. I remain attentive, but unfortunately not believe that so soon I can report on an exciting video.

Gaviscon Side Effects

Auslese 2008 - I'm there!

Why I write a science blog? First of all I am an expectant scientists, and therefore naturally interested in scientific issues. were a number of graduate students and interns to do that already - it makes me but also fun, my enthusiasm for science to share with others.
I have learned during the study but only academic writing, which is a rather dry and formal language. The imparting of scientific topics, even and especially to non-scientists about here on the blog makes me so the challenge to break out of my usual scientific language patterns. What I do not always succeed, as I am confident. The more
has it got me that a five-member panel of scientists and journalists rounding "What does that say research on plants to parasites " for well thought enough about him together with 14 other highly recommended blog posts in the Science Blog Auslese 2008 take !

In the spirit: A warm welcome to all who have found the Science Café here. Check out quietly around, and read in other scientific contributions purely by me. I will try to write in 2009 contributions, which are worthy for the next selection.

Many thanks to the jurors, but also to Marc and Lars for the idea and the organization - and to the anonymous Nominator who has proposed my contribution for the elite!